I've just changed from a 2007 FJR1300AS to a Trophy and can confirm what BluePilot says, the FJR and Trophy are quite different.
I've only done a few hundred miles on my Trophy after a fairly length test ride, and although the Trophy has a lot to live up to, it's making a very good go of it!
Key points for me are:
FJR was comfortable, Trophy is very comfortable.
Weather protection on the FJR was good, on the Trophy it's very good.
Maneuverability on the FJR was good, on the Trophy it's very good, especially for a bike bike around town.
Trophy seems to have more low speed torque, but the FJR ultimately had more raw power. (This might change when the Trophy is fully run in!)
I love the cruise control which the FJR didn't have (I know the 2013 FJR has got it), however, it's almost impossible to set the cruise speed without jerkiness because you have to let go of the throttle to reach the set button. Why didn't Triumph put the cruise controls on the left handlebar - like on the new FJR?
Without going in to a long list of other comparisons, I think the Trophy wins against my 2007 FJR. It might have been closer with the 2013 FJR, but I needed a Triumph!
